Module Spyder :: Class HaddockPartnerExpertInterface

Class HaddockPartnerExpertInterface

             object --+    
                      |    
HaddockPartnerInterface --+
                          |
                         HaddockPartnerExpertInterface

Spyder-generated class

module haddock

file /home/sjoerd/data/Spyder-devel/haddock/partner.spy

Description

Definition of a single HADDOCK molecule in docking

Used in the HADDOCK Expert/Guru Interface

Wiki

http://www.spyderware.nl/wiki/classes/HaddockPartnerExpertInterface

Form block

>>>            
pdb Structure definition
r Restraint definition
TYPE r required
TYPE segid required
LENGTH segid 1
OPTION moleculetype "Protein", "DNA", "RNA"
segid Segment ID to use during the docking
SUPERHEADER his Histidine protonation states
his Histidine
SUPERHEADER auto_his Histidine protonation states
auto_his Automatically guess histidine protonation states using WHATIF
semiflex Semi-flexible segments
fullyflex Fully flexible segments
moleculetype What kind of molecule are you docking?
charged_nter The N-terminus of your protein is positively charged
charged_cter The C-terminus of your protein is negatively charged               
>>>

Instance Methods

[hide private]

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Instance Variables

[hide private]

Bool auto_his = True

HistidineStateArray his = []

SemiflexSegmentList semiflex = SemiflexSegmentList(mode= "automatic", segments= [])

SegmentList fullyflex = []

Bool charged_nter = True

Bool charged_cter = True

Delete (form)

Inherited from HaddockPartnerInterface

String moleculetype = "Protein"

PDBInterface pdb

RestraintsInterface r = RestraintsInterface()

*String segid

Properties

[hide private]

Inherited from object: __class__