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object --+
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EasyInterface --+
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ExpertInterface --+
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GuruInterface
Spyder-generated class
module haddock
file /home/sjoerd/Spyder-devel/haddock/haddock.spy
Web form for the HADDOCK server Guru Interface
http://www.spyderware.nl/wiki/classes/GuruInterface
>>> if par_nonbonded != None: assert par_nonbonded in ("PROLSQ", "PARMALLH6", "PARALLHDG", "OPLSX") if dielec != None: assert dielec in ("cdie", "rdie") assert w_vdw == None or len(w_vdw) == 3 assert w_elec == None or len(w_elec) == 3 assert w_dist == None or len(w_dist) == 3 assert w_sani == None or len(w_sani) == 3 assert w_dani == None or len(w_dani) == 3 assert w_vean == None or len(w_vean) == 3 assert w_cdih == None or len(w_cdih) == 3 assert w_sym == None or len(w_sym) == 3 assert w_bsa == None or len(w_bsa) == 3 assert w_deint == None or len(w_deint) == 3 assert w_desolv == None or len(w_desolv) == 3 if firstwater != None: assert firstwater in ("yes", "no") if solvate_method != None: assert solvate_method in ("db", "restraints", "pnt") assert ncssegments == None or len(ncssegments) <= 5 assert c2segments == None or len(c2segments) <= 10 assert c3segments == None or len(c3segments) <= 5 assert c4segments == None or len(c4segments) == 0 assert c5segments == None or len(c5segments) <= 1 assert auto_passive_radius >= 0 and auto_passive_radius <= 1000 >>>
>>> OPTION par_nonbonded "PROLSQ", "PARMALLH6", "PARALLHDG", "OPLSX" OPTION dielec "cdie", "rdie" LENGTH w_vdw 3 LENGTH w_elec 3 LENGTH w_dist 3 LENGTH w_sani 3 LENGTH w_dani 3 LENGTH w_vean 3 LENGTH w_cdih 3 LENGTH w_sym 3 LENGTH w_bsa 3 LENGTH w_deint 3 LENGTH w_desolv 3 OPTION firstwater "yes", "no" OPTION solvate_method "db", "restraints", "pnt" >>>
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| *String | username | ||
| *String | password | ||
| Bool |
xplortodiana = False
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| SymmetrySpecification |
ncs = dict(on= False, constant= 1)
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| *LabeledRangePairArray | ncssegments | ||
| SymmetrySpecification |
symmetry = dict(on= False, constant= 10)
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| *LabeledRangePairArray | c2segments | ||
| *LabeledRangeTripleArray | c3segments | ||
| *LabeledRangeQuadrupleArray | c4segments | ||
| *LabeledRangeQuintupleArray | c5segments | ||
| ExtStageConstants |
unamb = 0, 2, (10, 10, 50, 50)
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| ExtStageConstants |
amb = 0, 2, (10, 10, 50, 50)
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| ExtStageConstants |
hbond = 1, 2, (10, 10, 50, 50)
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| StageConstants |
dihedrals = 5, 5, 50, 200
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| Bool |
air_scaling = False
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| Integer |
tot_unamb = 25
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| Integer |
tot_amb = 0
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| StageConstants |
mrswi = 0.5, 0.5, 0.5, 0.5
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| StageConstants |
rswi = 0.5, 0.5, 0.5, 0.5
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| StageConstants |
masy = -1,-1,-0.1,-0.1
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| StageConstants |
asy = 1, 1, 0.1, 0.1
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| KarplusConstants |
c1 = False, 6.98,-1.38, 1.72,-60, (0, 0.2, 1, 1)
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| KarplusConstants |
c2 = False, 6.98,-1.38, 1.72,-120, (0, 0.2, 1, 1)
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| KarplusConstants |
c3 = False, 6.98,-1.38, 1.72,-120, (0, 0.2, 1, 1)
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| KarplusConstants |
c4 = False, 6.98,-1.38, 1.72,-120, (0, 0.2, 1, 1)
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| KarplusConstants |
c5 = False, 6.98,-1.38, 1.72,-120, (0, 0.2, 1, 1)
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| RDCInterface |
rdc1 = "NO", 0.4, 8, (0, 2, (0.1, 1, 1, 1)), (1, 10, 40, 40),
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| RDCInterface |
rdc2 = "NO", 0.4, 8, (0, 2, (0.1, 1, 1, 1)), (1, 10, 40, 40),
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| RDCInterface |
rdc3 = "NO", 0.4, 8, (0, 2, (0.1, 1, 1, 1)), (1, 10, 40, 40),
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| RDCInterface |
rdc4 = "NO", 0.4, 8, (0, 2, (0.1, 1, 1, 1)), (1, 10, 40, 40),
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| RDCInterface |
rdc5 = "NO", 0.4, 8, (0, 2, (0.1, 1, 1, 1)), (1, 10, 40, 40),
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| DANIInterface |
dan1 = "NO", (0, 2, (1, 5, 10, 10)), 9.771, 1.557, 0.455, 599.
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| DANIInterface |
dan2 = "NO", (0, 1, (1, 5, 10, 10)), 9.84,-1.35, 0.308, 599.91
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| DANIInterface |
dan3 = "NO", (1, 1, (1, 5, 10, 10)), 9.84,-1.35, 0.308, 599.91
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| DANIInterface |
dan4 = "NO", (0, 2, (1, 5, 10, 10)), 9.84,-1.35, 0.308, 599.91
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| DANIInterface |
dan5 = "NO", (0, 2, (1, 5, 10, 10)), 9.84,-1.35, 0.308, 599.91
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| String |
par_nonbonded = "OPLSX"
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| Bool |
dihedflag = True
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| Bool |
elecflag_0 = True
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| Bool |
elecflag_1 = True
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| String |
dielec = "cdie"
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| Float |
inter_rigid = 1
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| ScalingConstants |
scaling_init = 0.001, 0.001, 0.05
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| ScalingConstants |
scaling_fin = 0.001, 1, 1
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| FloatArray |
w_vdw = 0.01, 1, 1
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| FloatArray |
w_elec = 1, 1, 0.2
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| FloatArray |
w_dist = 0.01, 0.1, 0.1
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| FloatArray |
w_sani = 0.1, 0.1, 0.1
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| FloatArray |
w_dani = 0.01, 0.1, 0.1
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| FloatArray |
w_vean = 0.1, 0.1, 0.1
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| FloatArray |
w_cdih = 0, 0, 0
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| FloatArray |
w_sym = 0.1, 0.1, 0.1
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| FloatArray |
w_bsa = -0.01,-0.01, 0
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| FloatArray |
w_deint = 0, 0, 0
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| FloatArray |
w_desolv = 1, 1, 1
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| Integer |
skip_struc = 0
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| Bool |
randorien = True
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| Bool |
rigidmini = True
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| Bool |
rigidtrans = True
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| Integer |
iniseed = 917
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| Integer |
tadhigh_t = 2000
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| Integer |
tadinit1_t = 2000
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| Integer |
tadfinal1_t = 500
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| Integer |
tadinit2_t = 1000
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| Integer |
tadfinal2_t = 50
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| Integer |
tadinit3_t = 500
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| Integer |
tadfinal3_t = 50
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| Float |
timestep = 0.002
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| Integer |
tadfactor = 8
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| Integer |
initiosteps = 500
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| Integer |
cool1_steps = 500
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| Integer |
cool2_steps = 1000
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| Integer |
cool3_steps = 1000
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| String |
firstwater = "yes"
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| Integer |
waterheatsteps = 100
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| Integer |
watersteps = 1250
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| Integer |
watercoolsteps = 500
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| Bool |
calcdesolv = False
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| String |
solvate_method = "db"
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| Float |
water_restraint_initial = 5
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| Float |
water_restraint_cutoff = 5
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| Float |
water_restraint_scale = 25
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| Float |
water_tokeep = 0.25
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| Float |
water_randfrac = 0
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| Float |
water_surfcutoff = 8
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| Bool |
water_analysis = False
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| Bool |
transwater = True
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| Integer |
waterensemble = 1
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| Integer |
anastruc_1 = 200
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| Float |
dist_hb = 2.5
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| Float |
dist_nb = 3.9
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| Bool |
keepwater = False
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| Delete | (password) | ||
| Delete | (username) | ||
| Inherited from ExpertInterface | |||
|---|---|---|---|
| Delete | (form) | ||
| Delete | (p1) | ||
| Delete | (p2) | ||
| Float |
auto_passive_radius = 6.5
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| Float |
clust_rmsd = 7.5
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| Integer |
clust_size = 4
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| Bool |
cmrest = False
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| Bool |
create_narestraints = True
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| Bool |
delenph = True
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| *File | dihedralfile | ||
| Float |
epsilon = 10
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| *File | hbondfile | ||
| Float |
kcont = 1
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| Float |
ksurf = 1
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| Float |
ncvpart = 2
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| Bool |
noecv = True
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| Integer |
ntrials = 5
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| HaddockPartnerInterface | p1 | ||
| HaddockPartnerInterface | p2 | ||
| Bool |
ranair = False
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| Bool |
rotate180_0 = True
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| Bool |
rotate180_1 = False
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| Bool |
smoothing = False
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| String |
solvent = "water"
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| Integer |
structures_0 = 1000
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| Integer |
structures_1 = 200
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| Bool |
surfrest = False
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| *File | tblfile | ||
| *File | unambigtblfile | ||
| Bool |
waterdock = False
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| Integer |
waterrefine = 200
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| Inherited from EasyInterface | |||
| *String | runname | ||
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Inherited from |
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rdc1
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rdc2
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rdc3
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rdc4
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rdc5
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dan1
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dan2
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dan3
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dan4
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dan5
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| Generated by Epydoc 3.0.1 on Sat Jul 25 00:23:05 2009 | http://epydoc.sourceforge.net |