Module Spyder
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Module Spyder

source code

Classes [hide private]
  Float
Wrapper class around a Python float The conversion engine does not operate on Float
  Integer
Wrapper class around a Python int The conversion engine does not operate on Integer
  String
Wrapper class around a Python str The conversion engine does not operate on String, conversion into something else is always a cast
  Bool
Class that emulates a Python bool...
  Data
  File
File class: can read/save files and read URLs Permissions can be governed through various switches in system.fly Upon construction, the file <name> is read and its contents stored in <data> All File objects with the same <name> point to the same data
  Filename
Parent class: String
  ObjectList
Parent class: (Spyder.core.spyderlist)
  Stream
Spyder-generated class
  Range
Spyder-generated class
  OptionalRange
Spyder-generated class
  RGBAImage
Spyder-generated class
  RGBImage
Spyder-generated class
  ImageData
Spyder-generated class
  RGBAData
Spyder-generated class
  RGBData
Spyder-generated class
  Data_PNG
Spyder-generated class
  Data_BMP
Spyder-generated class
  Data_JPEG
Spyder-generated class
  Data_JPG
Spyder-generated class
  Data_GIF
Spyder-generated class
  PDBCode
Spyder-generated class
  PDBCodeChain
Spyder-generated class
  Data_PDB
Spyder-generated class
  File_PDB
Spyder-generated class
  PDBInterface
Spyder-generated class
  PDBData
Spyder-generated class
  PDBCodeList
Parent class: PDBCodeArray
  PDBCodeChainList
Parent class: PDBCodeChainArray
  AtomValidationError
Parent class: (ValidationError)
  LabeledRange
Spyder-generated class
  BasePlanarSpecification
Spyder-generated class
  AngleErr
Spyder-generated class
  BasePair
Spyder-generated class
  SurfaceAccessibility
Spyder-generated class
  InterResidueDistance
Spyder-generated class
  RasmolSelection
Spyder-generated class
  DNABasePuckerGroup
Spyder-generated class
  DNABaseDihedralGroup
Spyder-generated class
  DNA_definition
Spyder-generated class
  Data_PHYLIP
Spyder-generated class
  Data_CLUSTAL
Spyder-generated class
  Data_FASTA
Spyder-generated class
  Data_MSF
Spyder-generated class
  File_SequenceAlignment
Spyder-generated class
  SequenceAlignmentForm
Spyder-generated class
  BlenderUIbutton
Spyder-generated class
  BlenderUIcustombutton
Spyder-generated class
  BlenderUImember
Spyder-generated class
  BlenderUIcomplexmember
Spyder-generated class
  BlenderUI
Spyder-generated class
  Color
Spyder-generated class
  NewMaterial
Spyder-generated class
  Material
Parent class: String
  World3D
Spyder-generated class
  Coordinate2D
Spyder-generated class
  Coordinate
Spyder-generated class
  Vector
Spyder-generated class
  AxisSystem
Spyder-generated class
  Edge3D
Spyder-generated class
  Face3D
Spyder-generated class
  Polygon
Spyder-generated class
  Vertex
Spyder-generated class
  Object3D
Spyder-generated class
  Block3D
Spyder-generated class
  Circle
Spyder-generated class
  Circle16
Spyder-generated class
  Circle32
Spyder-generated class
  Circle64
Spyder-generated class
  Cylinder
Spyder-generated class
  Cylinder16
Spyder-generated class
  Cylinder32
Spyder-generated class
  Cylinder64
Spyder-generated class
  DisplayList
Spyder-generated class
  MultiDisplayList
Spyder-generated class
  ObjectList3D
Spyder-generated class
  ObjectGroup3D
Spyder-generated class
  MultiInstance3D
Spyder-generated class
  BlenderMVert
Spyder-generated class
  BlenderMEdge
Spyder-generated class
  BlenderFaceModes
Spyder-generated class
  BlenderMFace
Spyder-generated class
  BlenderMeshModes
Spyder-generated class
  BlenderMesh
Spyder-generated class
  Data_BLEND
Spyder-generated class
  Filename_BLEND
Spyder-generated class
  BlenderMultiLink
Spyder-generated class
  BlenderMultiLinkInstance
Spyder-generated class
  BlenderLink
Spyder-generated class
  BlenderWrapper
Spyder-generated class
  NewBlenderMaterial
Spyder-generated class
  BlenderImage
Spyder-generated class
  RubikSnake
Spyder-generated class
  RubikSnakeCode
Spyder-generated class
  Bolt3D
Spyder-generated class
  Stairs3D
Spyder-generated class
  Tube3D
Spyder-generated class
  Pillar3D
Spyder-generated class
  POrbital
Spyder-generated class
  FormulaGrid2D
Spyder-generated class
  CoordinateGrid2D
Spyder-generated class
  House3DDoor
Spyder-generated class
  House3DWallWindow
Spyder-generated class
  House3DWall
Spyder-generated class
  House3DFloor
Spyder-generated class
  House3DGroundFloor
Spyder-generated class
  House3D
Spyder-generated class
  Pyramid
Spyder-generated class
  Sphere3D
Spyder-generated class
  SphereCloud3D
Spyder-generated class
  Chunk3D
Spyder-generated class
  HaddockValidationError
Parent class: (Spyder.atom.AtomValidationError)
  LigandData
Spyder-generated class
  HistidineState
Spyder-generated class
  LabeledRangePair
Spyder-generated class
  LabeledRangeTriple
Spyder-generated class
  LabeledRangeQuadruple
Spyder-generated class
  LabeledRangeQuintuple
Spyder-generated class
  SegmentList
Spyder-generated class
  SemiflexSegmentList
Spyder-generated class
  SymmetrySpecification
Spyder-generated class
  StageConstants
Spyder-generated class
  ExtStageConstants
Spyder-generated class
  KarplusConstants
Spyder-generated class
  RDCConstants
Spyder-generated class
  RDCInterface
Spyder-generated class
  RDCParameters
Spyder-generated class
  RDCRunParameters
Spyder-generated class
  DANIConstants
Spyder-generated class
  DANIInterface
Spyder-generated class
  DANIParameters
Spyder-generated class
  DANIRunParameters
Spyder-generated class
  ScalingConstants
Spyder-generated class
  CNSQueue
Spyder-generated class
  HaddockResidueList
Parent class: IntegerArray
  HaddockRestraintsSelectionPartnerList
Parent class: HaddockResidueList
  RestraintsInterface
Spyder-generated class
  HaddockPartnerInterface
Spyder-generated class
  HaddockPartnerExpertInterface
Spyder-generated class
  HaddockPartnerParameters
Spyder-generated class
  HaddockMultiPartnerInterface
Spyder-generated class
  Data_TBL
Spyder-generated class
  HaddockEasyInterface
Spyder-generated class
  HaddockExpertInterface
Spyder-generated class
  HaddockGuruInterface
Spyder-generated class
  HaddockRunParameters
Spyder-generated class
  HaddockRunParameterInterface
Spyder-generated class
  HaddockMultiInterface
Spyder-generated class
  HaddockMultiRunParameters
Spyder-generated class
  HaddockRefinementPartnerInterface
Spyder-generated class
  HaddockRefinementInterface
Spyder-generated class
  HaddockPredictionInterface
Spyder-generated class
  MultiRestraintsInterfaceSubunit
Spyder-generated class
  MultiRestraintsInterface
Spyder-generated class
Functions [hide private]
 
determine_passive_residues(activereslist, surfacelist, pdb, radius) source code
 
detect_bodies(pdb) source code
 
clear() source code
 
renderPolygon(a) source code
 
renderObject(o, norender=False) source code
 
renderObjectArray(a, norender=False) source code
 
axissystem_to_matrix(a) source code
 
renderDisplayList(d, norender=False) source code
 
renderMultiDisplayList(md, norender=False) source code
 
makeBlock(b) source code
 
drawCircle16(c) source code
 
drawCircle32(c) source code
 
drawCircle64(c) source code
 
drawCylinder16(c) source code
 
drawCylinder32(c) source code
 
drawCylinder64(c) source code
 
untieObject(o) source code
 
renderMultiInstance(mi, norender=False) source code
 
renderObjectGroup(og, norender=False) source code
 
register_newmaterial(mat, *args, **kargs) source code
 
get_material(name) source code
 
worldshow(w, show=True)
Calls show() on every material and then on every object in the World3D
source code
 
spydertextregister(text) source code
 
get_spydertext(entrynr) source code
 
spyderdefinemethod_2(bw) source code
 
spyderdefinemethod_3(bw) source code
 
spyderconverterfunction_21(c) source code
 
spyderconverterfunction_22(r) source code
 
spyderconverterfunction_23(r) source code
 
spyderconverterfunction_24(b) source code
 
spyderconverterfunction_25(s) source code
 
spyderconverterfunction_26(s) source code
 
spyderconverterfunction_27(p) source code
 
spyderconverterfunction_28(p) source code
 
spyderconverterfunction_29(p) source code
 
spyderconverterfunction_30(g) source code
 
spyderconverterfunction_31(wall) source code
 
spyderconverterfunction_32(p) source code
 
spyderconverterfunction_33(house) source code
 
spyderconverterfunction_34(s) source code
 
spyderconverterfunction_35(sphere) source code
 
spyderconverterfunction_36(ch) source code
 
spyderconverterfunction_1(i) source code
 
spyderconverterfunction_2(i) source code
 
spyderconverterfunction_3(i) source code
 
spyderconverterfunction_4(i) source code
 
spyderconverterfunction_5(i) source code
 
spyderconverterfunction_6(i) source code
 
spyderconverterfunction_7(i) source code
 
spyderconverterfunction_8(i) source code
 
spyderconverterfunction_9(i) source code
 
spyderconverterfunction_10(i) source code
 
spyderconverterfunction_11(mri) source code
 
validate_tbl(restraints) source code
 
generate_tbl(act_1, pass_1, act_2, pass_2, segid1, segid2) source code
 
validate_pdb(data, chain, dataname="PDB file") source code